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troggle/parsers/survex.py

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Python
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import sys
import os
import re
import time
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import copy
import subprocess
from pathlib import Path
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from datetime import datetime, timedelta, date
from django.utils.timezone import get_current_timezone
from django.utils.timezone import make_aware
import troggle.settings as settings
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from troggle.core.models.caves import Cave, Entrance, QM, LogbookEntry
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from troggle.core.utils import get_process_memory, chaosmonkey
from troggle.parsers.people import GetPersonExpeditionNameLookup
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from troggle.parsers.logbooks import GetCaveLookup
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from troggle.core.models.troggle import DataIssue, Expedition
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from troggle.core.models.survex import SurvexPersonRole, Wallet, SurvexDirectory, SurvexFile, SurvexBlock, SurvexStation
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'''Imports the tree of survex files following form a defined root .svx file
It does also NOT scan the Loser repo for all the svx files - though it should !
'''
todo = '''Also walk the entire tree in the :loser: repo looking for unconnected survex files
- add them to the system so that they can be reported-on
- produce a parser report and create a troggle report page (some are OK, e.g. futility series replaced by ARGE survey in 115)
- If you look at e.g. http://expo.survex.com/survexfile/161#T_caves-1623/161/lhr/alllhr
you will see than have the team members are recognised by this parser, but not recognised by the
wider troggle system (the name is not a hyperlink) - apparently randomly.
GetPersonExpeditionNameLookup() needs to be fixed.
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-#BUG, if *date comes after *team, the person's date is not set at all. It needs re-setting at the endof the block.
- LoadSurvexFile() Creates a new current survexfile and valid .survexdirectory
The survexblock passed-in is not necessarily the parent. FIX THIS.
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'''
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survexblockroot = None
ROOTBLOCK = "rootblock"
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METRESINFEET = 3.28084
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debugprint = False # Turns on debug printout for just one *include file
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debugprinttrigger = "!"
# debugprinttrigger = "caves-1623/40/old/EisSVH"
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class MapLocations(object):
p = [
("laser.0_7", "BNase", "Reference", "Bräuning Nase laser point"),
("226-96", "BZkn", "Reference", "Bräuning Zinken trig point"),
("vd1","VD1","Reference", "VD1 survey point"),
("laser.kt114_96","HSK","Reference", "Hinterer Schwarzmooskogel trig point"),
("2000","Nipple","Reference", "Nipple (Weiße Warze)"),
("3000","VSK","Reference", "Vorderer Schwarzmooskogel summit"),
("topcamp", "OTC", "Reference", "Old Top Camp"),
("laser.0", "LSR0", "Reference", "Laser Point 0"),
("laser.0_1", "LSR1", "Reference", "Laser Point 0/1"),
("laser.0_3", "LSR3", "Reference", "Laser Point 0/3"),
("laser.0_5", "LSR5", "Reference", "Laser Point 0/5"),
("225-96", "BAlm", "Reference", "Bräuning Alm trig point")
]
def points(self):
for ent in Entrance.objects.all():
if ent.best_station():
try:
k = ent.caveandentrance_set.all()[0].cave
except:
message = " ! Failed to get Cave linked to Entrance:{} from:{} best:{}".format(ent.name, ent.filename, ent.best_station())
DataIssue.objects.create(parser='entrances', message=message)
print(message)
raise
try:
areaName = k.getArea().short_name
except:
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message = " ! Failed to get Area on cave '{}' linked to Entrance:{} from:{} best:{}".format(k, ent.name, ent.filename, ent.best_station())
DataIssue.objects.create(parser='entrances', message=message)
print(message)
raise
self.p.append((ent.best_station(), "%s-%s" % (areaName, str(ent)[5:]), ent.needs_surface_work(), str(ent)))
message = f" - {len(self.p)} entrances linked to caves."
print(message)
return self.p
def __str__(self):
return "{} map locations".format(len(self.p))
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def get_offending_filename(path):
return "/survexfile/" + path + ".svx"
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class SurvexLeg():
"""No longer a models.Model subclass, so no longer a database table
"""
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tape = 0.0
compass = 0.0
clino = 0.0
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class LoadingSurvex():
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"""A 'survex block' is a *begin...*end set of cave data.
A survex file can contain many begin-end blocks, which can be nested, and which can *include
other survex files.
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A 'scanswallet' is what we today call a "survey scans folder" or a "wallet".
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"""
rx_begin = re.compile(r'(?i)begin')
rx_end = re.compile(r'(?i)end$')
rx_title = re.compile(r'(?i)title$')
rx_ref = re.compile(r'(?i)ref$')
rx_data = re.compile(r'(?i)data$')
rx_flags = re.compile(r'(?i)flags$')
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rx_alias = re.compile(r'(?i)alias$')
rx_entrance = re.compile(r'(?i)entrance$')
rx_date = re.compile(r'(?i)date$')
rx_units = re.compile(r'(?i)units$')
rx_team = re.compile(r'(?i)team$')
rx_set = re.compile(r'(?i)set$')
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rx_names = re.compile(r'(?i)names')
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rx_flagsnot= re.compile(r"not\s")
rx_linelen = re.compile(r"[\d\-+.]+$")
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instruments = "(waiting_patiently|slacker|Useless|nagging|unknown|Inst|instrument|rig|rigger|rigging|helper|something| compass|comp|clino|Notes|sketch|book|Tape|Dog|Pics|photo|drawing|Helper|GPS|Disto|Distox|Distox2|topodroid|point|Consultant|nail|polish|nail_polish_bitch|nail_polish_monkey|varnish|nail_polish|nail_varnish|bitch|monkey|PowerDrill|drill)"
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rx_teammem = re.compile(r"(?i)"+instruments+"?(?:es|s)?\s+(.*)"+instruments+"?(?:es|s)?$")
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rx_person = re.compile(r"(?i) and | / |, | & | \+ |^both$|^none$")
rx_qm = re.compile(r'(?i)^\s*QM(\d+)\s+?([a-dA-DxX])\s+([\w\-\_]+)\.([\w\.\-]+)\s+(([\w\-]+)\.([\w\.\-]+)|\-)\s+(.+)$')
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# does not recognise non numeric suffix survey point ids
rx_qm0 = re.compile(r'(?i)^\s*QM(\d+)\s+(.+)$')
rx_qm_tick = re.compile(r'(?i)^\s*QM(\d+)\s+TICK\s([\d\-]+)\s(.*)$')
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# remember there is also QM_PATTERN used in views.other and set in settings.py
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rx_tapelng = re.compile(r'(?i).*(tape|length).*$')
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rx_cave = re.compile(r'(?i)caves-(\d\d\d\d)/([-\d\w]+|\d\d\d\d-?\w+-\d+)')
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rx_comment = re.compile(r'([^;]*?)\s*(?:;\s*(.*))?\n?$')
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rx_comminc = re.compile(r'(?i)^\|\*include[\s]*([-\w/]*).*$') # inserted by linear collate ;*include
rx_commcni = re.compile(r'(?i)^\|\*edulcni[\s]*([-\w/]*).*$') # inserted by linear collate ;*edulcni
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rx_include = re.compile(r'(?i)^\s*(\*include[\s].*)$')
rx_commref = re.compile(r'(?i)^\s*ref(?:erence)?[\s.:]*(\d+)\s*#\s*(X)?\s*(\d+)')
rx_wallet = re.compile(r'(?i)^\s*wallet[\s.:]*(\d+)\s*#\s*(X)?\s*(\d+)')
rx_implicit= re.compile(r'(?i)^[\s.:]*(\d+)\s*#\s*(X)?\s*(\d+)')
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rx_ref_text= re.compile(r'(?i)^\s*\"[^"]*\"\s*$')
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rx_star = re.compile(r'(?i)\s*\*[\s,]*(\w+)\s*(.*?)\s*(?:;.*)?$')
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rx_starref = re.compile(r'(?i)^\s*\*ref[\s.:]*((?:19[6789]\d)|(?:20[0123]\d))\s*#?\s*(X)?\s*(.*?\d+.*?)$')
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rx_argsref = re.compile(r'(?i)^[\s.:]*((?:19[6789]\d)|(?:20[0123]\d))\s*#?\s*(X)?\s*(.*?\d+.*?)$')
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rx_badmerge= re.compile(r'(?i).*(\>\>\>\>\>)|(\=\=\=\=\=)|(\<\<\<\<\<).*$')
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rx_ref2 = re.compile(r'(?i)\s*ref[.;]?')
rx_ref3 = re.compile(r'(?i)\s*wallet[.;]?')
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# This interprets the survex "*data normal" command which sets out the order of the fields in the data, e.g.
# *DATA normal from to length gradient bearing ignore ignore ignore ignore
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datastardefault = {"type":"normal", "from":0, "to":1, "tape":2, "compass":3, "clino":4}
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flagsdefault = {"duplicate":False, "surface":False, "splay":False, "skiplegs":False, "splayalias":False}
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datastar ={}
flagsstar = {}
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units = "metres"
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unitsfactor = None
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slength = 0.0
legsnumber = 0
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depthbegin = 0
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depthinclude = 0
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unitsstack = []
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legsnumberstack = []
slengthstack = []
personexpedstack = []
stackbegin =[]
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flagsstack =[]
datastack =[]
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includestack = []
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stacksvxfiles = []
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svxfileslist = []
svxdirs = {}
uniquename = {}
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expos = {}
survexdict = {} # each key is a directory, and its value is a list of files
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lineno = 0
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insp = ""
callcount = 0
caverncount = 0
ignoreprefix = ["surface", "kataster", "fixedpts", "gpx"]
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ignorenoncave = ["caves-1623", "caves-1626", "caves-1623/2007-neu"]
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includedfilename =""
currentsurvexblock = None
currentsurvexfile = None
currentcave = None
caverndate = None
currentpersonexped = []
pending = []
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def __init__(self):
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self.caveslist = GetCaveLookup()
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pass
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def LoadSurvexFallThrough(self, survexblock, line, cmd):
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if cmd == "require":
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pass # should we check survex version available for processing?
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elif cmd in ["equate", "fix", "calibrate", "cs", "export", "case",
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"declination", "infer","instrument", "sd"]:
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pass # we ignore all these, which is fine.
else:
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if cmd in ["include", "data", "flags", "title", "entrance","set", "units", "alias", "ref"]:
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message = "! Warning. Unparsed [*{}]: '{}' {} - not an error (probably)".format(cmd, line, survexblock.survexfile.path)
print(self.insp+message)
DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(survexblock.survexfile.path))
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else:
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message = "! Bad unrecognised svx command: [*{}] {} ({}) {}".format(cmd, line, survexblock, survexblock.survexfile.path)
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print(self.insp+message)
DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(survexblock.survexfile.path))
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def LoadSurvexTeam(self, survexblock, line):
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"""Interpeting the *team fields means interpreting older style survex as well as current survex standard,
*team Insts Anthony Day - this is how most of our files specify the team member
*team "Anthony Day" notes pictures tape - this is how the survex documentation says it should be done
We have a huge variety of abbreviations and mispellings. The most laconic being
*team gb, bl
If you look at e.g. http://expo.survex.com/survexfile/161#T_caves-1623/161/lhr/alllhr
you will see than have the team members are recognised by this parser, but not recognised by the
wider troggle system (the name is not a hyperlink) - apparently randomly.
GetPersonExpeditionNameLookup() needs to be fixed.
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personrole is used to record that a person was on a trip, NOT the role they played.
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"""
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teammembers = [ ]
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mteammember = self.rx_teammem.match(line)
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if mteammember:
for tm in self.rx_person.split(mteammember.group(2)):
if tm:
personexpedition = survexblock.expedition and GetPersonExpeditionNameLookup(survexblock.expedition).get(tm.lower())
if (personexpedition, tm) not in teammembers:
teammembers.append((personexpedition, tm))
personrole = SurvexPersonRole(survexblock=survexblock, personexpedition=personexpedition, personname=tm)
personrole.save()
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personrole.expeditionday = survexblock.expeditionday #BUG, if *date comes after *team, this is NOT SET.
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if personexpedition:
personrole.person=personexpedition.person
self.currentpersonexped.append(personexpedition)
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personrole.save()
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def LoadSurvexEntrance(self, survexblock, line):
# Not using this yet
pass
def LoadSurvexAlias(self, survexblock, line):
# *alias station - ..
splayalias = re.match("(?i)station\s*\-\s*\.\.\s*$",line)
if splayalias:
self.flagsstar["splayalias"] = True
else:
message = "! Bad *ALIAS: '{}' ({}) {}".format(line, survexblock, survexblock.survexfile.path)
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print(self.insp+message)
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DataIssue.objects.create(parser='survex', message=message)
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def LoadSurvexUnits(self, survexblock, line):
# all for 4 survex files with measurements in feet. bugger.
tapeunits = self.rx_tapelng.match(line) # tape|length
if not tapeunits:
return
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convert = re.match("(?i)(\w*)\s*([\.\d]+)\s*(\w*)",line)
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if convert:
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factor = convert.groups()[1]
self.unitsfactor = float(factor)
if debugprint:
message = "! *UNITS NUMERICAL conversion [{}x] '{}' ({}) {}".format(factor, line, survexblock, survexblock.survexfile.path)
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print(self.insp+message)
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DataIssue.objects.create(parser='survexunits', message=message)
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feet = re.match("(?i).*feet$",line)
metres = re.match("(?i).*(METRIC|METRES|METERS)$",line)
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if feet:
self.units = "feet"
elif metres:
self.units = "metres"
else:
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message = "! *UNITS in YARDS!? - not converted '{}' ({}) {}".format(line, survexblock, survexblock.survexfile.path)
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print(self.insp+message)
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DataIssue.objects.create(parser='survexunits', message=message)
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def LoadSurvexDate(self, survexblock, line):
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# we should make this a date RANGE for everything
def findexpedition(year):
return Expedition.objects.filter(year=year)
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def setdate(year):
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# cacheing to save DB query on every block and to prepare for django-less troggle in future
if year in self.expos:
expo = self.expos[year]
else:
expeditions = findexpedition(year)
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if len(expeditions) != 1 :
message = f"! More than one expedition in year {year} '{line}' ({survexblock}) {survexblock.survexfile.path}"
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print(self.insp+message)
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DataIssue.objects.create(parser='survexunits', message=message)
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expo= expeditions[0]
self.expos[year]= expo
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survexblock.expedition = expo
survexblock.expeditionday = survexblock.expedition.get_expedition_day(survexblock.date)
survexblock.save()
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if len(line) > 10:
if line[10] == "-":
line = line[0:10]
if len(line) == 10:
year = line[:4]
# TO DO set to correct Austrian timezone Europe/Vienna
# %m and %d need leading zeros. Source svx files require them.
survexblock.date = datetime.strptime(re.sub(r"\.", "-", line), '%Y-%m-%d')
setdate(year)
elif len(line) == 7:
year = line[:4]
survexblock.date = datetime.strptime(re.sub(r"\.", "-", line), '%Y-%m') # sets to first of month
setdate(year)
elif len(line) == 4:
year = line[:4]
survexblock.date = datetime.strptime(line, '%Y') # sets to January 1st
setdate(year)
else:
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message = "! Error DATE unrecognised '{}' ({}) {}".format(line, survexblock, survexblock.survexfile.path)
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print(self.insp+message)
DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(survexblock.survexfile.path))
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def LoadSurvexLeg(self, survexblock, sline, comment):
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"""This reads compass, clino and tape data but only keeps the tape lengths,
the rest is discarded after error-checking.
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Now skipping the error checking - returns as soon as the leg is not one we count.
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"""
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invalid_clino = 180.0
invalid_compass = 720.0
invalid_tape = 0.0
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if self.flagsstar["skiplegs"]:
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if debugprint:
print("skip in ", self.flagsstar, survexblock.survexfile.path)
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return
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if debugprint:
print("! LEG datastar type:{}++{}\n{} ".format(self.datastar["type"].upper(), survexblock.survexfile.path, sline))
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if self.datastar["type"] == "passage":
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return
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if self.datastar["type"] == "cartesian":
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return
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if self.datastar["type"] == "nosurvey":
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return
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if self.datastar["type"] == "diving":
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return
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if self.datastar["type"] == "cylpolar":
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return
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if debugprint:
print(" !! LEG data lineno:{}\n !! sline:'{}'\n !! datastar['tape']: {}".format(self.lineno, sline, self.datastar["tape"]))
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if self.datastar["type"] != "normal":
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return
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datastar = self.datastar # shallow copy: alias but the things inside are the same things
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survexleg = SurvexLeg()
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ls = sline.lower().split()
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# skip all splay legs
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try:
if ls[datastar["from"]] == ".." or ls[datastar["from"]] == ".":
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if debugprint:
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print("Splay in ", survexblock.survexfile.path)
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return
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if ls[datastar["to"]] == ".." or ls[datastar["to"]] == ".":
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if debugprint:
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print("Splay in ", survexblock.survexfile.path)
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return
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if self.flagsstar["splayalias"]:
if ls[datastar["from"]] == "-":
if debugprint:
print("Aliased splay in ", survexblock.survexfile.path)
return
if ls[datastar["to"]] == "-":
if debugprint:
print("Aliased splay in ", survexblock.survexfile.path)
return
except:
message = ' ! datastar parsing from/to incorrect in line %s in %s' % (ls, survexblock.survexfile.path)
print(self.insp+message)
DataIssue.objects.create(parser='survexleg', message=message, url=get_offending_filename(survexblock.survexfile.path))
return
2020-07-04 13:31:46 +01:00
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try:
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tape = ls[datastar["tape"]]
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except:
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message = ' ! datastar parsing incorrect in line %s in %s' % (ls, survexblock.survexfile.path)
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print(self.insp+message)
DataIssue.objects.create(parser='survexleg', message=message, url=get_offending_filename(survexblock.survexfile.path))
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survexleg.tape = invalid_tape
return
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# e.g. '29/09' or '(06.05)' in the tape measurement
2020-07-04 01:10:17 +01:00
# tape = tape.replace("(","") # edited original file (only one) instead
# tape = tape.replace(")","") # edited original file (only one) instead
# tape = tape.replace("/",".") # edited original file (only one) instead.
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try:
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if self.unitsfactor:
tape = float(tape) * self.unitsfactor
if debugprint:
message = " ! Units: Length scaled {}m '{}' in ({}) units:{} factor:{}x".format(tape, ls, survexblock.survexfile.path, self.units, self.unitsfactor)
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print(self.insp+message)
DataIssue.objects.create(parser='survexleg', message=message, url=get_offending_filename(survexblock.survexfile.path))
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if self.units =="feet":
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tape = float(tape) / METRESINFEET
if debugprint:
message = " ! Units: converted to {:.3f}m from {} '{}' in ({})".format(tape, self.units, ls, survexblock.survexfile.path)
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print(self.insp+message)
DataIssue.objects.create(parser='survexleg', message=message, url=get_offending_filename(survexblock.survexfile.path))
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survexleg.tape = float(tape)
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self.legsnumber += 1
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except ValueError:
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message = " ! Value Error: Tape misread in line'{}' in {} units:{}".format(ls, survexblock.survexfile.path, self.units)
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print(self.insp+message)
DataIssue.objects.create(parser='survexleg', message=message, url=get_offending_filename(survexblock.survexfile.path))
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survexleg.tape = invalid_tape
try:
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survexblock.legslength += survexleg.tape
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self.slength += survexleg.tape
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except ValueError:
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message = " ! Value Error: Tape length not added '{}' in {} units:{}".format(ls, survexblock.survexfile.path, self.units)
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print(self.insp+message)
DataIssue.objects.create(parser='survexleg', message=message, url=get_offending_filename(survexblock.survexfile.path))
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try:
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lcompass = ls[datastar["compass"]]
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except:
message = ' ! Value Error: Compass not found in line %s in %s' % (ls, survexblock.survexfile.path)
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print(self.insp+message)
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DataIssue.objects.create(parser='survexleg', message=message, url=get_offending_filename(survexblock.survexfile.path))
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lcompass = invalid_compass
try:
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lclino = ls[datastar["clino"]]
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except:
print(("! Clino misread in", survexblock.survexfile.path))
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print((" datastar:", datastar))
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print((" Line:", ls))
message = ' ! Value Error: Clino misread in line %s in %s' % (ls, survexblock.survexfile.path)
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DataIssue.objects.create(parser='survexleg', message=message, url=get_offending_filename(survexblock.survexfile.path))
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lclino = invalid_clino
if lclino == "up":
survexleg.clino = 90.0
lcompass = invalid_compass
elif lclino == "down":
survexleg.clino = -90.0
lcompass = invalid_compass
elif lclino == "-" or lclino == "level":
survexleg.clino = -90.0
try:
survexleg.compass = float(lcompass)
except ValueError:
print(("! Compass misread in", survexblock.survexfile.path))
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print((" datastar:", datastar))
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print((" Line:", ls))
message = " ! Value Error: lcompass:'{}' line {} in '{}'".format(lcompass,
ls, survexblock.survexfile.path)
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DataIssue.objects.create(parser='survexleg', message=message, url=get_offending_filename(survexblock.survexfile.path))
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survexleg.compass = invalid_compass
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# delete the object to save memory
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survexleg = None
2020-05-13 19:57:07 +01:00
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def LoadSurvexRef(self, survexblock, args):
#print(self.insp+ "*REF ---- '"+ args +"'")
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url= get_offending_filename(survexblock.survexfile.path)
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# *REF but also ; Ref years from 1960 to 2039
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refline = self.rx_ref_text.match(args)
if refline:
# a textual reference such as "1996-1999 Not-KH survey book pp 92-95"
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print(f'{self.insp} *REF quoted text so ignored:{args} in {survexblock.survexfile.path}')
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return
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if len(args)< 4:
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message = " ! Empty or BAD *REF statement '{}' in '{}'".format(args, survexblock.survexfile.path)
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print(self.insp+message)
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DataIssue.objects.create(parser='survex', message=message, url=url)
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return
2020-06-24 14:10:13 +01:00
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argsgps = self.rx_argsref.match(args)
if argsgps:
yr, letterx, wallet = argsgps.groups()
else:
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message = " ! Wallet *REF '{}' malformed id in '{}' ".format(args, survexblock.survexfile.path)
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print(self.insp+message)
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DataIssue.objects.create(parser='survex', message=message, url=url)
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return
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if not letterx:
letterx = ""
else:
letterx = "X"
if len(wallet)<2:
wallet = "0" + wallet
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if not (int(yr)>1960 and int(yr)<2039):
message = " ! Wallet year out of bounds {yr} '{refscan}' {survexblock.survexfile.path}"
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print(self.insp+message)
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DataIssue.objects.create(parser='survex', message=message, url=url)
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refscan = "%s#%s%s" % (yr, letterx, wallet)
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try:
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if int(wallet)>99:
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message = " ! Wallet *REF {} - very big (more than 99) so probably wrong in '{}'".format(refscan, survexblock.survexfile.path)
print(self.insp+message)
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DataIssue.objects.create(parser='survex', message=message, url=url)
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except:
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message = " ! Wallet *REF {} - not numeric in '{}' -- parsing continues".format(refscan, survexblock.survexfile.path)
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print(self.insp+message)
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DataIssue.objects.create(parser='survex', message=message, url=url)
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manywallets = Wallet.objects.filter(walletname=refscan)
if manywallets:
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survexblock.scanswallet = manywallets[0] # this is a ForeignKey field
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print(manywallets[0])
survexblock.save()
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if len(manywallets) > 1:
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message = " ! Wallet *REF {} - more than one found {} scan folders in {}".format(refscan, len(manywallets), survexblock.survexfile.path)
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print(self.insp+message)
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DataIssue.objects.create(parser='survex', message=message, url=url)
else:
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message = " ! Wallet *REF '{}' - NOT found '{}'".format(refscan, survexblock.survexfile.path)
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print(self.insp+message)
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DataIssue.objects.create(parser='survex', message=message, url=url)
def TickSurvexQM(self, survexblock, qmtick):
# Now we need to find the correct QM object. It will be in the same block and have the same number.
try:
qm = QM.objects.filter(block=survexblock, number=int(qmtick.group(1)))
except:
#raise
message = f' ! QM TICK find FAIL QM{qmtick.group(1)} date:"{qmtick.group(2)}" qmlist:"{qm}" in "{survexblock.survexfile.path}" + comment:"{qmtick.group(3)}" '
print(message)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(survexblock.survexfile.path))
if len(qm)>1:
message = f' ! QM TICK MULTIPLE found FAIL QM{qmtick.group(1)} date:"{qmtick.group(2)}" in "{survexblock.survexfile.path}" + comment:"{qmtick.group(3)}" '
print(message)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(survexblock.survexfile.path))
qm[0].ticked = True
qm[0].save()
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def LoadSurvexQM(self, survexblock, qmline):
insp = self.insp
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qm_no = qmline.group(1) # this may not be unique across multiple survex files
qm_grade = qmline.group(2)
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if qmline.group(3): # usual closest survey station
qm_nearest = qmline.group(3)
if qmline.group(4):
qm_nearest = qm_nearest +"."+ qmline.group(4)
if qmline.group(6) and qmline.group(6) != '-':
qm_resolve_station = qmline.group(6)
if qmline.group(7):
qm_resolve_station = qm_resolve_station +"."+ qmline.group(7)
else:
qm_resolve_station = ""
qm_notes = qmline.group(8)
2020-06-25 03:17:56 +01:00
# Spec of QM in SVX files:
# ;Serial number grade(A/B/C/D/X) nearest-station resolution-station description
# ;QM1 a hobnob_hallway_2.42 hobnob-hallway_3.42 junction of keyhole passage
# ;QM1 a hobnob_hallway_2.42 - junction of keyhole passage
2020-06-25 03:17:56 +01:00
# NB none of the SurveyStations are in the DB now, so if we want to link to aSurvexStation
# we would have to create one. But that is not obligatory and no QMs loaded from CSVs have one
# Older troggle/CSV assumes a logbook entry 'found_by' for each QM, with a date.
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# We don't need this anymore so we don't need to create a placeholder logbook entry.
qmyear = str(survexblock.date)[:4]
blockname = survexblock.name[:6] + survexblock.name[-1:]
#logslug = f'D{int(qmyear)}_{blockname}_{int(qm_no):03d}'
if survexblock.survexfile.cave:
caveslug = survexblock.survexfile.cave.slug()
place = survexblock.survexfile.cave
else:
caveslug = None
place = None
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try:
qm = QM.objects.create(number=qm_no,
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# nearest_station=a_survex_station_object, # can be null
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nearest_station_description=qm_resolve_station,
nearest_station_name=qm_nearest,
grade=qm_grade.upper(),
location_description=qm_notes,
block = survexblock, # only set for survex-imported QMs
blockname = blockname, # only set for survex-imported QMs
expoyear = str(survexblock.date.year),
cave = survexblock.survexfile.cave)
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qm.save
except:
message = " ! QM{} FAIL to create {} in'{}'".format(qm_no, qm_nearest,survexblock.survexfile.path)
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print(insp+message)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(survexblock.survexfile.path))
2020-06-25 03:17:56 +01:00
2020-07-08 00:00:56 +01:00
def LoadSurvexDataNormal(self,survexblock,args):
"""Sets the order for data elements in this and following blocks, e.g.
*data normal from to compass clino tape
*data normal from to tape compass clino
We are only collecting length data so we are disinterested in from, to, LRUD etc.
"""
2020-07-03 17:22:15 +01:00
# datastardefault = { # included here as reference to help understand the code
# "type":"normal",
# "t":"leg",
# "from":0,
# "to":1,
# "tape":2,
# "compass":3,
# "clino":4}
2020-07-03 17:22:15 +01:00
datastar = copy.deepcopy(self.datastardefault)
if args == "":
# naked '*data' which is relevant only for passages. Ignore. Continue with previous settings.
return
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# DEFAULT | NORMAL | CARTESIAN| NOSURVEY |PASSAGE | TOPOFIL | CYLPOLAR | DIVING
ls = args.lower().split()
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if ls[0] == "default":
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self.datastar = copy.deepcopy(self.datastardefault)
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elif ls[0] == "normal" or ls[0] == "topofil":
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if not ("from" in datastar and "to" in datastar):
message = " ! - Unrecognised *data normal statement '{}' {}|{}".format(args, survexblock.name, survexblock.survexpath)
print(message)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(survexblock.survexfile.path))
return
else:
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datastar = self.datastardefault
# ls = ["normal", "from", "to", "tape", "compass", "clino" ]
for i in range(1, len(ls)): # len[0] is "normal"
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if ls[i].lower() =="newline":
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message = f" ! - ABORT *data statement has NEWLINE in it in {survexblock.survexfile.path}. Not parsed by troggle. '{args}'"
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print(message)
print(message,file=sys.stderr)
DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(survexblock.survexfile.path))
return False
if ls[i] in ["bearing","compass"]:
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datastar["compass"] = i-1
if ls[i] in ["clino","gradient"]:
2020-07-03 17:22:15 +01:00
datastar["clino"] = i-1
if ls[i] in ["tape","length"]:
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datastar["tape"] = i-1
self.datastar = copy.deepcopy(datastar)
return
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elif ls[0] == "cartesian" or ls[0] == "nosurvey" or ls[0] == "diving" or ls[0] == "cylpolar" or ls[0] == "passage":
2020-07-04 01:10:17 +01:00
# message = " ! - *data {} blocks ignored. {}|{}" '{}' .format(ls[0].upper(), survexblock.name, survexblock.survexpath, args)
# print(message)
# print(message,file=sys.stderr)
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# DataIssue.objects.create(parser='survex', message=message)
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self.datastar["type"] = ls[0]
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else:
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message = " ! - Unrecognised *data statement '{}' {}|{}".format(args, survexblock.name, survexblock.survexpath)
print(message)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(survexblock.survexfile.path))
2020-06-27 17:55:59 +01:00
2020-07-03 14:53:36 +01:00
def LoadSurvexFlags(self, args):
# Valid flags are DUPLICATE, SPLAY, and SURFACE, and a flag may be preceded with NOT to turn it off.
# Default values are NOT any of them
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self.flagsstar = copy.deepcopy(self.flagsdefault)
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flags = []
args = self.rx_flagsnot.sub("not",args)
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argslist = args.split()
for s in argslist:
flags.append(s)
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if debugprint:
print(" ^ flagslist:{}".format(flags),)
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if "duplicate" in flags:
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self.flagsstar["duplicate"] = True
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if "surface" in flags:
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self.flagsstar["surface"] = True
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if "splay" in flags:
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self.flagsstar["splay"] = True
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if "notduplicate" in flags:
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self.flagsstar["duplicate"] = False
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if "notsurface" in flags:
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self.flagsstar["surface"] = False
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if "notsplay" in flags:
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self.flagsstar["splay"] = False
2020-07-03 14:53:36 +01:00
2020-07-03 17:22:15 +01:00
# if self.flagsstar["duplicate"] == True or self.flagsstar["surface"] == True or self.flagsstar["splay"] == True:
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# actually we do want to count duplicates as this is for "effort expended in surveying underground"
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if self.flagsstar["surface"] == True or self.flagsstar["splay"] == True:
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self.flagsstar["skiplegs"] = True
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if debugprint:
print(" $ flagslist:{}".format(flags),)
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def IdentifyCave(self, cavepath):
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if cavepath.lower() in self.caveslist:
return self.caveslist[cavepath.lower()]
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# TO DO - this predates the big revision to Gcavelookup so look at this again carefully
2020-06-28 01:50:34 +01:00
path_match = self.rx_cave.search(cavepath)
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if path_match:
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sluggy = '{}-{}'.format(path_match.group(1), path_match.group(2))
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guesses = [sluggy.lower(), path_match.group(2).lower()]
for g in guesses:
if g in self.caveslist:
self.caveslist[cavepath] = self.caveslist[g]
return self.caveslist[g]
print(' ! Failed to find cave for {}'.format(cavepath.lower()))
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else:
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# not a cave, but that is fine.
# print(' ! No regex(standard identifier) cave match for %s' % cavepath.lower())
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return None
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def GetSurvexDirectory(self, headpath):
"""This creates a SurvexDirectory if it has not been seen before, and on creation
it sets the primarysurvexfile. This is correct as it should be set on the first file
in the directory, where first is defined by the *include ordering. Which is what we
are doing.
"""
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if not headpath:
return self.svxdirs[""]
if headpath.lower() not in self.svxdirs:
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self.svxdirs[headpath.lower()] = SurvexDirectory(path=headpath, primarysurvexfile=self.currentsurvexfile)
self.svxdirs[headpath.lower()].save()
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self.survexdict[self.svxdirs[headpath.lower()]] = [] # list of the files in the directory
2020-06-29 21:16:13 +01:00
return self.svxdirs[headpath.lower()]
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def ReportNonCaveIncludes(self, headpath, includelabel, depth):
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"""Ignore surface, kataser and gpx *include survex files
"""
if not self.pending:
self.pending = set()
fpending = Path(settings.CAVEDESCRIPTIONS, "pendingcaves.txt")
if fpending.is_file():
with open(fpending, "r") as fo:
cids = fo.readlines()
for cid in cids:
self.pending.add(cid.rstrip('\n').upper())
if headpath in self.ignorenoncave:
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message = f" - {headpath} is <ignorenoncave> (while creating '{includelabel}' sfile & sdirectory)"
#print("\n"+message)
#print("\n"+message,file=sys.stderr)
return
for i in self.ignoreprefix:
if headpath.startswith(i):
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message = f" - {headpath} starts with <ignoreprefix> (while creating '{includelabel}' sfile & sdirectory)"
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# print("\n"+message)
# print("\n"+message,file=sys.stderr)
return
caveid = f'{headpath[6:10]}-{headpath[11:]}'.upper()
if caveid in self.pending:
# Yes we didn't find this cave, but we know it is a pending one. So not an error.
# print(f'! ALREADY PENDING {caveid}',file=sys.stderr)
return
message = f" ! Error: not a cave nor ignorable. headpath:'{headpath}' while parsing '{includelabel=}.svx' at depth:[{len(depth)}]. ignore prefix list:'{self.ignoreprefix}'"
print("\n"+message)
print("\n"+message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(headpath))
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print(f' # datastack in LoadSurvexFile:{includelabel} type:', end="",file=sys.stderr)
for dict in self.datastack:
print(f'<{dict["type"].upper()} >', end="",file=sys.stderr)
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2020-07-04 01:10:17 +01:00
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def LoadSurvexFile(self, svxid):
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"""Creates SurvexFile in the database, and SurvexDirectory if needed
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with links to 'cave'
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Creates a new current survexfile and valid .survexdirectory
Inspects the parent folder of the survexfile and uses that to decide if this is a cave we know
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The survexblock passed-in is not necessarily the parent. FIX THIS.
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"""
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if debugprint:
print(" # datastack in LoadSurvexFile:{} 'type':".format(svxid), end="")
for dict in self.datastack:
print("'{}' ".format(dict["type"].upper()), end="")
print("")
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depth = " " * self.depthbegin
# print("{:2}{} - NEW survexfile:'{}'".format(self.depthbegin, depth, svxid))
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headpath = os.path.dirname(svxid)
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newfile = SurvexFile(path=svxid)
newfile.save() # until we do this there is no internal id so no foreign key works
self.currentsurvexfile = newfile
newdirectory = self.GetSurvexDirectory(headpath)
newdirectory.save()
newfile.survexdirectory = newdirectory
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self.survexdict[newdirectory].append(newfile)
cave = self.IdentifyCave(headpath) # cave already exists in db
if not newdirectory:
message = " ! 'None' SurvexDirectory returned from GetSurvexDirectory({})".format(headpath)
print(message)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url = f'/survexfile/{svxid}')
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if cave:
newdirectory.cave = cave
newfile.cave = cave
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# print(f"\n - New directory '{newdirectory}' for cave '{cave}'",file=sys.stderr)
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else: # probably a surface survey, or a cave in a new area e.g. 1624 not previously managed, and not in the pending list
self.ReportNonCaveIncludes(headpath, svxid, depth)
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if not newfile.survexdirectory:
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message = " ! SurvexDirectory NOT SET in new SurvexFile {} ".format(svxid)
print(message)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message)
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self.currentsurvexfile.save() # django insists on this although it is already saved !?
try:
newdirectory.save()
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except:
print(newdirectory, file=sys.stderr)
print(newdirectory.primarysurvexfile, file=sys.stderr)
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raise
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if debugprint:
print(" # datastack end LoadSurvexFile:{} 'type':".format(svxid), end="")
for dict in self.datastack:
print("'{}' ".format(dict["type"].upper()), end="")
print("")
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def ProcessIncludeLine(self, included):
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global debugprint
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svxid = included.groups()[0]
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if svxid.lower() == debugprinttrigger.lower():
debugprint = True
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self.LoadSurvexFile(svxid)
self.stacksvxfiles.append(self.currentsurvexfile)
def ProcessEdulcniLine(self, edulcni):
"""Saves the current survexfile in the db
"""
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global debugprint
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svxid = edulcni.groups()[0]
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if debugprint:
depth = " " * self.depthbegin
print("{:2}{} - Edulcni survexfile:'{}'".format(self.depthbegin, depth, svxid))
if svxid.lower() == debugprinttrigger.lower():
debugprint = False
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self.currentsurvexfile.save()
self.currentsurvexfile = self.stacksvxfiles.pop()
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def LoadSurvexComment(self, survexblock, comment):
# ignore all comments except ;ref, ; wallet and ;QM and ;*include (for collated survex file)
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# rx_ref2 = re.compile(r'(?i)\s*ref[.;]?')
# rx_ref3 = re.compile(r'(?i)\s*wallet[.;]?')
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# This should also check that the QM survey point rxists in the block
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refline = self.rx_commref.match(comment)
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if refline:
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#comment = re.sub('(?i)\s*ref[.;]?',"",comment.strip())
comment = self.rx_ref2.sub("",comment.strip())
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self.LoadSurvexRef(survexblock, comment)
walletline = self.rx_wallet.match(comment)
if walletline:
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#comment = re.sub('(?i)\s*wallet[.;]?',"",comment.strip())
comment = self.rx_ref3.sub("",comment.strip())
self.LoadSurvexRef(survexblock, comment)
implicitline = self.rx_implicit.match(comment)
if implicitline:
self.LoadSurvexRef(survexblock, comment)
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qml = self.rx_qm0.match(comment)
if qml:
qmline = self.rx_qm.match(comment)
if qmline:
self.LoadSurvexQM(survexblock, qmline)
else:
qmtick = self.rx_qm_tick.match(comment)
if qmtick:
self.TickSurvexQM(survexblock, qmtick)
else:
message = f' ! QM Unrecognised as valid in "{survexblock.survexfile.path}" QM{qml.group(1)} "{qml.group(2)}" : regex failure, typo?'
print(message)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(survexblock.survexfile.path))
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included = self.rx_comminc.match(comment)
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# ;*include means 'we have been included'; whereas *include means 'proceed to include'
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# bug, If the original survex file contians the line ;*include then we pick it up ! So fix our special code to be ;|*include
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if included:
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self.ProcessIncludeLine(included)
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edulcni = self.rx_commcni.match(comment)
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# ;*edulcni means we are returning from an included file
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if edulcni:
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self.ProcessEdulcniLine(edulcni)
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def LoadSurvexSetup(self,survexblock, survexfile):
self.depthbegin = 0
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self.datastar = self.datastardefault
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blocklegs = self.legsnumber
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print(self.insp+" - MEM:{:.3f} Reading. parent:{} <> {} ".format(get_process_memory(),survexblock.survexfile.path, survexfile.path))
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self.lineno = 0
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sys.stderr.flush();
self.callcount +=1
if self.callcount % 10 ==0 :
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print(".", file=sys.stderr,end='')
if self.callcount % 500 ==0 :
print("\n", file=sys.stderr,end='')
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# Try to find the cave in the DB if not use the string as before
path_match = re.search(r"caves-(\d\d\d\d)/(\d+|\d\d\d\d-?\w+-\d+)/", survexblock.survexfile.path)
if path_match:
pos_cave = '%s-%s' % (path_match.group(1), path_match.group(2))
cave = getCaveByReference(pos_cave)
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if cave:
survexfile.cave = cave
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def LinearLoad(self, survexblock, path, svxlines):
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"""Loads a single survex file. Usually used to import all the survex files which have been collated
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into a single file. Loads the begin/end blocks using a stack for labels.
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"""
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blkid = None
pathlist = None
args = None
oldflags = None
blockcount = 0
self.lineno = 0
slengthtotal = 0.0
nlegstotal = 0
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self.relativefilename = path
cave = self.IdentifyCave(path) # this will produce null for survex files which are geographic collections
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self.currentsurvexfile = survexblock.survexfile
self.currentsurvexfile.save() # django insists on this although it is already saved !?
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self.datastar = copy.deepcopy(self.datastardefault)
self.flagsstar = copy.deepcopy(self.flagsdefault)
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def tickle():
nonlocal blockcount
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blockcount +=1
if blockcount % 10 ==0 :
print(".", file=sys.stderr,end='')
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if blockcount % 200 ==0 :
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print("\n", file=sys.stderr,end='')
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print(" - MEM:{:7.3f} MB in use".format(get_process_memory()),file=sys.stderr)
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print(" ", file=sys.stderr,end='')
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sys.stderr.flush()
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def printbegin():
nonlocal blkid
nonlocal pathlist
depth = " " * self.depthbegin
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self.insp = depth
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if debugprint:
print("{:2}{} - Begin for :'{}'".format(self.depthbegin,depth, blkid))
pathlist = ""
for id in self.stackbegin:
if len(id) > 0:
pathlist += "." + id
def printend():
nonlocal args
depth = " " * self.depthbegin
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if debugprint:
print("{:2}{} - End from:'{}'".format(self.depthbegin,depth,args))
print("{:2}{} - LEGS: {} (n: {}, length:{} units:{})".format(self.depthbegin,
depth, self.slength, self.slength, self.legsnumber, self.units))
def pushblock():
nonlocal blkid
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if debugprint:
print(" # datastack at 1 *begin {} 'type':".format(blkid), end="")
for dict in self.datastack:
print("'{}' ".format(dict["type"].upper()), end="")
print("")
print("'{}' self.datastar ".format(self.datastar["type"].upper()))
# ------------ * DATA
self.datastack.append(copy.deepcopy(self.datastar))
# ------------ * DATA
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if debugprint:
print(" # datastack at 2 *begin {} 'type':".format(blkid), end="")
for dict in self.datastack:
print("'{}' ".format(dict["type"].upper()), end="")
print("")
print("'{}' self.datastar ".format(self.datastar["type"].upper()))
# ------------ * FLAGS
self.flagsstack.append(copy.deepcopy(self.flagsstar))
# ------------ * FLAGS
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pass
def popblock():
nonlocal blkid
nonlocal oldflags
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if debugprint:
print(" # datastack at *end '{} 'type':".format(blkid), end="")
for dict in self.datastack:
print("'{}' ".format(dict["type"].upper()), end="")
print("")
print("'{}' self.datastar ".format(self.datastar["type"].upper()))
# ------------ * DATA
self.datastar = copy.deepcopy(self.datastack.pop())
# ------------ * DATA
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if debugprint:
print(" # datastack after *end '{} 'type':".format(blkid), end="")
for dict in self.datastack:
print("'{}' ".format(dict["type"].upper()), end="")
print("")
print("'{}' self.datastar ".format(self.datastar["type"].upper()))
# ------------ * FLAGS
self.flagsstar = copy.deepcopy(self.flagsstack.pop())
# ------------ * FLAGS
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if debugprint:
if oldflags["skiplegs"] != self.flagsstar["skiplegs"]:
print(" # POP 'any' flag now:'{}' was:{} ".format(self.flagsstar["skiplegs"], oldflags["skiplegs"]))
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def starstatement(star):
nonlocal survexblock
nonlocal blkid
nonlocal pathlist
nonlocal args
nonlocal oldflags
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nonlocal slengthtotal
nonlocal nlegstotal
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cmd, args = star.groups()
cmd = cmd.lower()
# ------------------------BEGIN
if self.rx_begin.match(cmd):
blkid = args.lower()
# PUSH state ++++++++++++++
self.stackbegin.append(blkid)
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self.unitsstack.append((self.units, self.unitsfactor))
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self.legsnumberstack.append(self.legsnumber)
self.slengthstack.append(self.slength)
self.personexpedstack.append(self.currentpersonexped)
pushblock()
# PUSH state ++++++++++++++
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self.legsnumber = 0
self.slength = 0.0
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self.units = "metres"
self.currentpersonexped = []
printbegin()
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newsurvexblock = SurvexBlock(name=blkid, parent=survexblock,
survexpath=pathlist,
cave=self.currentcave, survexfile=self.currentsurvexfile,
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legsall=0, legslength=0.0)
newsurvexblock.save()
newsurvexblock.title = "("+survexblock.title+")" # copy parent inititally, overwrite if it has its own
survexblock = newsurvexblock
survexblock.save() # django insists on this , but we want to save at the end !
tickle()
# ---------------------------END
elif self.rx_end.match(cmd):
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survexblock.legsall = self.legsnumber
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survexblock.legslength = self.slength
printend()
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slengthtotal += self.slength
nlegstotal += self.legsnumber
try:
survexblock.parent.save() # django insists on this although it is already saved !?
except:
print(survexblock.parent, file=sys.stderr)
raise
try:
survexblock.save() # save to db at end of block
except:
print(survexblock, file=sys.stderr)
raise
# POP state ++++++++++++++
popblock()
self.currentpersonexped = self.personexpedstack.pop()
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self.legsnumber = self.legsnumberstack.pop()
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self.units, self.unitsfactor = self.unitsstack.pop()
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self.slength = self.slengthstack.pop()
blkid = self.stackbegin.pop()
self.currentsurvexblock = survexblock.parent
survexblock = survexblock.parent
oldflags = self.flagsstar
self.depthbegin -= 1
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# POP state ++++++++++++++
# -----------------------------
elif self.rx_title.match(cmd):
quotedtitle = re.match("(?i)^\"(.*)\"$",args)
if quotedtitle:
survexblock.title = quotedtitle.groups()[0]
else:
survexblock.title = args
elif self.rx_ref.match(cmd):
self.LoadSurvexRef(survexblock, args)
elif self.rx_flags.match(cmd):
oldflags = self.flagsstar
self.LoadSurvexFlags(args)
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if debugprint:
if oldflags["skiplegs"] != self.flagsstar["skiplegs"]:
print(" # CHANGE 'any' flag now:'{}' was:{} ".format(self.flagsstar["skiplegs"], oldflags["skiplegs"]))
elif self.rx_data.match(cmd):
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if self.LoadSurvexDataNormal(survexblock, args):
pass
else:
# Abort, we do not cope with this *data format
return
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elif self.rx_alias.match(cmd):
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self.LoadSurvexAlias(survexblock, args)
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elif self.rx_entrance.match(cmd):
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self.LoadSurvexEntrance(survexblock, args)
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elif self.rx_date.match(cmd):
self.LoadSurvexDate(survexblock, args)
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elif self.rx_units.match(cmd):
self.LoadSurvexUnits(survexblock, args)
elif self.rx_team.match(cmd):
self.LoadSurvexTeam(survexblock, args)
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elif self.rx_set.match(cmd) and self.rx_names.match(cmd):
pass
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elif self.rx_include.match(cmd):
message = " ! -ERROR *include command not expected here {}. Re-run a full Survex import.".format(path)
print(message)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, )
else:
self.LoadSurvexFallThrough(survexblock, args, cmd)
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for svxline in svxlines:
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self.lineno += 1
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sline, comment = self.rx_comment.match(svxline).groups()
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if comment:
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# this catches the ;*include NEWFILE and ;*edulcni ENDOFFILE lines too
self.LoadSurvexComment(survexblock, comment)
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if not sline:
continue # skip blank lines
# detect a merge failure inserted by version control
mfail = self.rx_badmerge.match(sline)
if mfail:
message = f"\n ! - ERROR version control merge failure\n - '{sline}'\n"
message = message + f" - line {self.lineno} in {blkid} in {survexblock}\n - NERD++ needed to fix it"
print(message)
print(message,file=sys.stderr)
DataIssue.objects.create(parser='survex', message=message)
continue # skip this line
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# detect a star command
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star = self.rx_star.match(sline)
if star:
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# yes we are reading a *command
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starstatement(star)
else: # not a *cmd so we are reading data OR a ";" rx_comment failed. We hope.
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self.LoadSurvexLeg(survexblock, sline, comment)
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self.legsnumber = nlegstotal
self.slength = slengthtotal
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def PushdownStackScan(self, survexblock, path, fin, flinear, fcollate):
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"""Follows the *include links in all the survex files from the root file 1623.svx
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and reads only the *include and *begin and *end statements. It produces a linearised
list of the include tree and detects blocks included more than once.
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"""
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thissvxline = 0
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indent = " " * self.depthinclude
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sys.stderr.flush();
self.callcount +=1
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if self.callcount % 10 ==0 :
print(".", file=sys.stderr,end='')
if self.callcount % 500 ==0 :
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print("\n ", file=sys.stderr,end='')
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if path in self.svxfileslist:
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message = f" * Warning. Duplicate detected. We have already seen this *include '{path}' from another survex file. Detected at callcount:{self.callcount} depth:{self.depthinclude}"
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print(message)
print(message,file=flinear)
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print("\n"+message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(path))
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if self.svxfileslist.count(path) > 20:
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message = " ! ERROR. Survex file already *included 20x. Probably an infinite loop so fix your *include statements that include this. Aborting. {}".format(path)
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print(message)
print(message,file=flinear)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(path))
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return
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self.svxfileslist.append(path)
try:
svxlines = fin.read().splitlines()
except UnicodeDecodeError:
# some bugger put an umlaut in a non-UTF survex file ?!
message = f" ! ERROR *include file '{path}' in '{survexblock}' has UnicodeDecodeError"
print(message)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(path))
return # skip this survex file and all things *included in it
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for svxline in svxlines:
self.lineno += 1
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thissvxline += 1
# detect a merge failure inserted by version control
mfail = self.rx_badmerge.match(svxline)
if mfail:
message = f"\n!! - ERROR version control merge failure\n - '{svxline}'\n"
message = message + f" - in '{path}' at line {thissvxline}\n"
message = message + f" - line {self.lineno} {survexblock}\n - Parsing aborted. NERD++ needed to fix it"
print(message)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(path))
return # skip this survex file and all things *included in it
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includestmt =self.rx_include.match(svxline)
if not includestmt:
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fcollate.write("{}\n".format(svxline.strip()))
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sline, comment = self.rx_comment.match(svxline.strip()).groups()
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star = self.rx_star.match(sline)
if star: # yes we are reading a *cmd
cmd, args = star.groups()
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cmd = cmd.lower()
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if re.match("(?i)include$", cmd):
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includepath = os.path.normpath(os.path.join(os.path.split(path)[0], re.sub(r"\.svx$", "", args)))
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fullpath = os.path.join(settings.SURVEX_DATA, includepath + ".svx")
self.RunSurvexIfNeeded(os.path.join(settings.SURVEX_DATA, includepath))
self.checkUniqueness(os.path.join(settings.SURVEX_DATA, includepath))
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if os.path.isfile(fullpath):
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#--------------------------------------------------------
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self.depthinclude += 1
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fininclude = open(fullpath,'r')
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fcollate.write(";|*include {}\n".format(includepath))
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flinear.write("{:2} {} *include {}\n".format(self.depthinclude, indent, includepath))
push = includepath.lower()
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self.includestack.append(push)
#-----------------
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self.PushdownStackScan(survexblock, includepath, fininclude, flinear, fcollate)
#-----------------
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pop = self.includestack.pop()
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if pop != push:
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message = "!! ERROR mismatch *include pop!=push {}".format(pop, push, self.includestack)
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print(message)
print(message,file=flinear)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(path))
flinear.write("{:2} {} *edulcni {}\n".format(self.depthinclude, indent, pop))
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fcollate.write(";|*edulcni {}\n".format(pop))
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fininclude.close()
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self.depthinclude -= 1
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#--------------------------------------------------------
else:
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message = " ! ERROR *include file not found for:'{}'".format(includepath)
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print(message)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(path))
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elif re.match("(?i)begin$", cmd):
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self.depthbegin += 1
depth = " " * self.depthbegin
if args:
pushargs = args
else:
pushargs = " "
self.stackbegin.append(pushargs.lower())
flinear.write(" {:2} {} *begin {}\n".format(self.depthbegin, depth, args))
pass
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elif re.match("(?i)end$", cmd):
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depth = " " * self.depthbegin
flinear.write(" {:2} {} *end {}\n".format(self.depthbegin, depth, args))
if not args:
args = " "
popargs = self.stackbegin.pop()
if popargs != args.lower():
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message = "!! ERROR mismatch in BEGIN/END labels pop!=push '{}'!='{}'\n{}".format(popargs, args, self. stackbegin)
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print(message)
print(message,file=flinear)
print(message,file=sys.stderr)
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DataIssue.objects.create(parser='survex', message=message, url=get_offending_filename(path))
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self.depthbegin -= 1
pass
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elif re.match("(?i)title$", cmd):
depth = " " * self.depthbegin
flinear.write(" {:2} {} *title {}\n".format(self.depthbegin, depth, args))
pass
def checkUniqueness(self,fullpath):
fn = Path(fullpath).name
if fn not in self.uniquename:
self.uniquename[fn] = [fullpath]
else:
self.uniquename[fn].append(fullpath)
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# This is not an error now that we are moving .3d files to the :loser: directory tree
# message = f" ! NON-UNIQUE survex filename, '{fn}' - '{self.uniquename[fn]}' #{len(self.uniquename[fn])}"
# print(message)
# DataIssue.objects.create(parser='survex', message=message)
message = f" NOTE: non-unique survex filename, '{fn}' - '{self.uniquename[fn]}' #{len(self.uniquename[fn])}"
print(message)
def RunSurvexIfNeeded(self,fullpath):
now = time.time()
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cav_t = now - 365*24*3600
log_t = now - 365*24*3600
svx_t = now - 365*24*3600
def runcavern():
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'''regenerates the .3d file from the .svx if it is older than the svx file, or older than the software,
or randomly using chaosmonkey() just to keep things ticking over.
'''
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print(f" - Regenerating stale (or chaos-monkeyed) cavern .log and .3d for '{fullpath}'\n at '{logpath}'\n")
print(f"days svx old: {(svx_t - log_t)/(24*3600):.1f} cav:{(cav_t - log_t)/(24*3600):.1f} log old: { (now - log_t)/(24*3600):.1f}")
outputdir = Path(str(f'{fullpath}.svx')).parent
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sp = subprocess.run([settings.CAVERN, "--log", f'--output={outputdir}', f'{fullpath}.svx'],
capture_output=True, check=False, text=True)
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if sp.returncode != 0:
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message = f' ! Error running {settings.CAVERN}: {fullpath}'
url = f'/survexfile{fullpath}.svx'.replace(settings.SURVEX_DATA, "")
DataIssue.objects.create(parser='xEntrances', message=message, url=url)
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print(message)
print(f'stderr:\n\n' + str(sp.stderr) + '\n\n' + str(sp.stdout) + '\n\nreturn code: ' + str(sp.returncode))
self.caverncount += 1
# should also collect all the .err files too and create a DataIssue for each one which
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# - is nonzero in size AND
# - has Error greater than 5% anywhere, or some other more serious error
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errpath = Path(fullpath + ".err")
if errpath.is_file():
if errpath.stat().st_size == 0:
errpath.unlink() # delete empty closure error file
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svxpath = Path(fullpath + ".svx")
logpath = Path(fullpath + ".log")
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outputdir = Path(svxpath).parent
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if not svxpath.is_file():
message = f' ! BAD survex file "{fullpath}" specified in *include (somewhere).. '
DataIssue.objects.create(parser='entrances', message=message)
print(message)
return
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if not logpath.is_file(): # always run if logfile not there
runcavern()
return
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self.caverndate = now - 2*365*24*3600
if not self.caverndate:
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sp = subprocess.run(["which", "{}".format(settings.CAVERN)],
capture_output=True, check=False, text=True)
if sp.returncode != 0:
message = f' ! Error running "which" on {settings.CAVERN}'
DataIssue.objects.create(parser='entrances', message=message)
print(message)
print(f'stderr:\n\n' + str(sp.stderr) + '\n\n' + str(sp.stdout) + '\n\nreturn code: ' + str(sp.returncode))
self.caverndate = os.path.getmtime(sp.stdout.strip())
else:
self.caverndate = now - 2*365*24*3600
cav_t = self.caverndate
log_t = os.path.getmtime(logpath)
svx_t = os.path.getmtime(svxpath)
now = time.time()
if svx_t - log_t > 0: # stale, svx file is newer than log
runcavern()
return
if now - log_t > 60 *24*60*60: # >60 days, re-run anyway
runcavern()
return
if cav_t - log_t > 0: # new version of cavern
runcavern()
return
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if chaosmonkey(350): # one in every 350 runs
runcavern()
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def FindAndLoadSurvex(survexblockroot):
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"""Follows the *include links successively to find files in the whole include tree
"""
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print(' - redirecting stdout to svxblks.log...')
stdout_orig = sys.stdout
# Redirect sys.stdout to the file
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sys.stdout = open('svxblks.log', 'w')
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print(' - Scanning Survex Blocks tree from {}.svx ...'.format(settings.SURVEX_TOPNAME),file=sys.stderr)
survexfileroot = survexblockroot.survexfile # i.e. SURVEX_TOPNAME only
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collatefilename = "_" + survexfileroot.path + ".svx"
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svx_scan = LoadingSurvex()
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svx_scan.callcount = 0
svx_scan.depthinclude = 0
fullpathtotop = os.path.join(survexfileroot.survexdirectory.path, survexfileroot.path)
# Rather than do this check for the presence of the .log and .3d files synchronously here,
# we should instead run this in a separate thread asynchronously.
print(" - RunSurvexIfNeeded cavern on '{}'".format(fullpathtotop), file=sys.stderr)
svx_scan.RunSurvexIfNeeded(fullpathtotop)
svx_scan.checkUniqueness(fullpathtotop)
indent=""
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fcollate = open(collatefilename, 'w')
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mem0 = get_process_memory()
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print(" - MEM:{:7.2f} MB START".format(mem0),file=sys.stderr)
flinear = open('svxlinear.log', 'w')
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flinear.write(" - MEM:{:7.2f} MB START {}\n".format(mem0,survexfileroot.path))
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print(" ", file=sys.stderr,end='')
finroot = survexfileroot.OpenFile()
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fcollate.write(";*include {}\n".format(survexfileroot.path))
flinear.write("{:2} {} *include {}\n".format(svx_scan.depthinclude, indent, survexfileroot.path))
import cProfile, pstats
from pstats import SortKey
pr = cProfile.Profile()
pr.enable()
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#----------------------------------------------------------------
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svx_scan.PushdownStackScan(survexblockroot, survexfileroot.path, finroot, flinear, fcollate)
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#----------------------------------------------------------------
pr.disable()
with open('PushdownStackScan.prof', 'w') as f:
ps = pstats.Stats(pr, stream=f)
ps.sort_stats(SortKey.CUMULATIVE)
ps.print_stats()
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flinear.write("{:2} {} *edulcni {}\n".format(svx_scan.depthinclude, indent, survexfileroot.path))
fcollate.write(";*edulcni {}\n".format(survexfileroot.path))
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mem1 = get_process_memory()
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flinear.write("\n - MEM:{:.2f} MB STOP {}\n".format(mem1,survexfileroot.path))
flinear.write(" - MEM:{:.3f} MB USED\n".format(mem1-mem0))
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svxfileslist = svx_scan.svxfileslist
flinear.write(" - {:,} survex files in linear include list \n".format(len(svxfileslist)))
flinear.close()
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fcollate.close()
print("\n - {:,} runs of survex 'cavern' refreshing .3d files \n".format(svx_scan.caverncount),file=sys.stderr)
svx_scan = None # Hmm. Does this actually delete all the instance variables if they are lists, dicts etc.?
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print("\n - {:,} survex files in linear include list \n".format(len(svxfileslist)),file=sys.stderr)
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mem1 = get_process_memory()
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print(" - MEM:{:7.2f} MB END ".format(mem0),file=sys.stderr)
print(" - MEM:{:7.3f} MB USED".format(mem1-mem0),file=sys.stderr)
svxfileslist = [] # free memory
# Before doing this, it would be good to identify the *equate and *entrance we need that are relevant to the
# entrance locations currently loaded after this by LoadPos(), but could better be done before ?
# look in MapLocations() for how we find the entrances
print('\n - Loading All Survex Blocks (LinearLoad)',file=sys.stderr)
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svx_load = LoadingSurvex()
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svx_load.survexdict[survexfileroot.survexdirectory] = []
svx_load.survexdict[survexfileroot.survexdirectory].append(survexfileroot)
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svx_load.svxdirs[""] = survexfileroot.survexdirectory
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# This next should be rewritten to use a generator so that only one
# line is held in memory at a time:
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with open(collatefilename, "r") as fcollate:
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svxlines = fcollate.read().splitlines()
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#pr2 = cProfile.Profile()
#pr2.enable()
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print(" ", file=sys.stderr,end='')
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#----------------------------------------------------------------
svx_load.LinearLoad(survexblockroot,survexfileroot.path, svxlines)
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#----------------------------------------------------------------
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#pr2.disable()
# with open('LinearLoad.prof', 'w') as f:
# ps = pstats.Stats(pr2, stream=f)
# ps.sort_stats(SortKey.CUMULATIVE)
# ps.print_stats()
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2020-06-28 14:42:26 +01:00
print("\n - MEM:{:7.2f} MB STOP".format(mem1),file=sys.stderr)
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print(" - MEM:{:7.3f} MB USED".format(mem1-mem0),file=sys.stderr)
# Close the logging file, Restore sys.stdout to our old saved file handle
sys.stdout.close()
print("+", file=sys.stderr)
sys.stderr.flush();
sys.stdout = stdout_orig
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legsnumber = svx_load.legsnumber
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mem1 = get_process_memory()
print(" - Number of SurvexDirectories: {}".format(len(svx_load.survexdict)))
tf=0
for d in svx_load.survexdict:
tf += len(svx_load.survexdict[d])
print(" - Number of SurvexFiles: {}".format(tf))
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print(f" - Number of Survex legs: {legsnumber}")
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svx_load = None
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return legsnumber
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def MakeSurvexFileRoot():
"""Returns a file_object.path = SURVEX_TOPNAME associated with directory_object.path = SURVEX_DATA
"""
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# find a cave, any cave..
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caves = Cave.objects.all()
smk = caves.filter(kataster_number="000") # returns a list, a QuerySet
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fileroot = SurvexFile(path=settings.SURVEX_TOPNAME, cave=None)
fileroot.save()
directoryroot = SurvexDirectory(path=settings.SURVEX_DATA, cave=smk[0], primarysurvexfile=fileroot)
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# MariaDB doesn't like this hack. Complains about non-null cave_id EVEN THOUGH our model file says this is OK:
# cave = models.ForeignKey('Cave', blank=True, null=True,on_delete=models.SET_NULL)
directoryroot.save()
fileroot.survexdirectory = directoryroot # i.e. SURVEX_DATA/SURVEX_TOPNAME
fileroot.save() # mutually dependent objects need a double-save like this
return fileroot
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def LoadSurvexBlocks():
2015-01-19 22:48:50 +00:00
2020-04-28 01:18:57 +01:00
print(' - Flushing All Survex Blocks...')
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SurvexBlock.objects.all().delete()
SurvexFile.objects.all().delete()
SurvexDirectory.objects.all().delete()
SurvexPersonRole.objects.all().delete()
SurvexStation.objects.all().delete()
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print(" - survex Data Issues flushed")
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DataIssue.objects.filter(parser='survex').delete()
DataIssue.objects.filter(parser='survexleg').delete()
DataIssue.objects.filter(parser='survexunits').delete()
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DataIssue.objects.filter(parser='entrances').delete()
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DataIssue.objects.filter(parser='xEntrances').delete()
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survexfileroot = MakeSurvexFileRoot()
# this next makes a block_object assciated with a file_object.path = SURVEX_TOPNAME
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survexblockroot = SurvexBlock(name=ROOTBLOCK, survexpath="", cave=None, survexfile=survexfileroot,
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legsall=0, legslength=0.0)
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# crashes here sometimes on MariaDB complaining that cave_id should not be null. But it should be.
survexblockroot.save()
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print(' - Loading Survex Blocks...')
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memstart = get_process_memory()
#----------------------------------------------------------------
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FindAndLoadSurvex(survexblockroot)
#----------------------------------------------------------------
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memend = get_process_memory()
print(" - MEMORY start:{:.3f} MB end:{:.3f} MB increase={:.3f} MB".format(memstart,memend, memend-memstart))
survexblockroot.save()
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print(' - Loaded All Survex Blocks.')
poslineregex = re.compile(r"^\(\s*([+-]?\d*\.\d*),\s*([+-]?\d*\.\d*),\s*([+-]?\d*\.\d*)\s*\)\s*([^\s]+)$")
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def LoadPositions():
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"""First load the survex stations for entrances and fixed points (about 600) into the database.
Run cavern to produce a complete .3d file, then run 3dtopos to produce a table of
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all survey point positions. Then lookup each position by name to see if we have it in the database
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and if we do, then save the x/y/z coordinates. This gives us coordinates of the entrances.
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If we don't have it in the database, print an error message and discard it.
"""
svx_t = 0
d3d_t = 0
def runcavern3d():
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outputdir = Path(str(f'{topdata}.svx')).parent
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# print(" - Regenerating stale cavern .log and .3d for '{}'\n days old: {:.1f} {:.1f} {:.1f}".
# format(topdata, (svx_t - d3d_t)/(24*3600), (cav_t - d3d_t)/(24*3600), (now - d3d_t)/(24*3600)))
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file3d = Path(f'{topdata}.3d')
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try:
sp = subprocess.run([settings.CAVERN, "--log", f"--output={outputdir}", f"{topdata}.svx"],
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capture_output=True, check=False, text=True) #check=False means exception not raised
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if sp.returncode != 0:
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message = f' ! Error: cavern: creating {file3d} in runcavern3()'
DataIssue.objects.create(parser='survex', message=message)
print(message)
# find the errors in the 1623.log file
sp = subprocess.run(["grep", "error:", f"{topdata}.log"],
capture_output=True, check=False, text=True) #check=False means exception not raised
message = f' ! Error: cavern: {sp.stdout}'
DataIssue.objects.create(parser='survex', message=message)
print(message)
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except:
message = " ! CalledProcessError 'cavern' in runcavern3() at {topdata}."
DataIssue.objects.create(parser='survex', message=message)
print(message)
if file3d.is_file():
message = " ! CalledProcessError. File permissions {file3d.stat().st_mode} on {str(file3d)}"
DataIssue.objects.create(parser='survex', message=message)
print(message)
if file3d.is_file(): # might be an old one though
try:
# print(" - Regenerating {} {}.3d in {}".format(settings.SURVEXPORT, topdata, settings.SURVEX_DATA))
sp = subprocess.run([settings.SURVEXPORT, '--pos', f'{file3d}'], cwd = settings.SURVEX_DATA,
capture_output=True, check=False, text=True)
if sp.returncode != 0:
print(f' ! Error: survexport creating {topdata}.pos in runcavern3().\n\n' + str(sp.stdout) + '\n\nreturn code: ' + str(sp.returncode))
except:
message = " ! CalledProcessError 'survexport' in runcavern3() at {file3d}."
DataIssue.objects.create(parser='entrances', message=message)
print(message)
else:
message = f" ! Failed to find {file3d} so aborting generation of new .pos, using old one if present"
DataIssue.objects.create(parser='entrances', message=message)
print(message)
topdata = os.fspath(Path(settings.SURVEX_DATA) / settings.SURVEX_TOPNAME)
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print(' - Generating a list of Pos from %s.svx and then loading...' % (topdata))
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found = 0
skip = {}
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print("\n") # extra line because cavern overwrites the text buffer somehow
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# cavern defaults to using same cwd as supplied input file
completed_process = subprocess.run(["which", "{}".format(settings.CAVERN)],
capture_output=True, check=True, text=True)
cav_t = os.path.getmtime(completed_process.stdout.strip())
svxpath = topdata + ".svx"
d3dpath = topdata + ".3d"
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pospath = topdata + ".pos"
svx_t = os.path.getmtime(svxpath)
if os.path.isfile(d3dpath):
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# always fails to find log file if a double directory, e.g. caves-1623/B4/B4/B4.svx Why ?
d3d_t = os.path.getmtime(d3dpath)
now = time.time()
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if not os.path.isfile(pospath):
runcavern3d()
if not os.path.isfile(d3dpath):
runcavern3d()
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elif d3d_t - svx_t > 0: # stale, 3d older than svx file
runcavern3d()
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elif now - d3d_t> 60 *24*60*60: # >60 days old, re-run anyway
runcavern3d()
elif cav_t - d3d_t > 0: # new version of cavern
runcavern3d()
mappoints = {}
for pt in MapLocations().points():
svxid, number, point_type, label = pt
mappoints[svxid]=True
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if not Path(pospath).is_file():
message = f" ! Failed to find {pospath} so aborting generation of entrance locations. "
DataIssue.objects.create(parser='entrances', message=message)
print(message)
return
posfile = open(pospath)
posfile.readline() #Drop header
try:
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survexblockroot = SurvexBlock.objects.get(name=ROOTBLOCK)
except:
try:
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survexblockroot = SurvexBlock.objects.get(id=1)
except:
message = ' ! FAILED to find root SurvexBlock'
print(message)
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DataIssue.objects.create(parser='survex', message=message)
raise
for line in posfile.readlines():
r = poslineregex.match(line)
if r:
x, y, z, id = r.groups()
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for sid in mappoints:
if id.endswith(sid):
blockpath = "." + id[:-len(sid)].strip(".")
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# But why are we doing this? Why do we need the survexblock id for each of these ?
# ..because mostly they don't actually appear in any SVX file. We should match them up
# via the cave data, not by this half-arsed syntactic match which almost never works. PMS.
if False:
try:
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sbqs = SurvexBlock.objects.filter(survexpath=blockpath)
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if len(sbqs)==1:
sb = sbqs[0]
if len(sbqs)>1:
message = " ! MULTIPLE SurvexBlocks {:3} matching Entrance point {} {} '{}'".format(len(sbqs), blockpath, sid, id)
print(message)
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DataIssue.objects.create(parser='survex', message=message)
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sb = sbqs[0]
elif len(sbqs)<=0:
message = " ! ZERO SurvexBlocks matching Entrance point {} {} '{}'".format(blockpath, sid, id)
print(message)
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DataIssue.objects.create(parser='survex', message=message)
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sb = survexblockroot
except:
message = ' ! FAIL in getting SurvexBlock matching Entrance point {} {}'.format(blockpath, sid)
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print(message)
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DataIssue.objects.create(parser='survex', message=message)
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try:
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ss = SurvexStation(name=id, block=survexblockroot)
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ss.x = float(x)
ss.y = float(y)
ss.z = float(z)
ss.save()
found += 1
except:
message = ' ! FAIL to create SurvexStation Entrance point {} {}'.format(blockpath, sid)
print(message)
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DataIssue.objects.create(parser='survex', message=message)
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raise
print(" - {} SurvexStation entrances found.".format(found))
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